Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs143036774 | chr2:17961129 | C/T | 1.53E-8 | 404 | 15.25 | 16.47 | 7.33 | KM Plot |
| LGG | rs143104221 | chr13:80640945 | C/CT | 3.5E-6 | 395 | 16.25 | 13.42 | 6.53 | KM Plot |
| LGG | rs143290637 | chr4:84436204 | GC/G | 1.22E-15 | 396 | 14.92 | 18.07 | 5.17 | KM Plot |
| LGG | rs143509387 | chr1:153529755 | G/GAACT | 1.05E-11 | 404 | 15.17 | 17.73 | 7.32 | KM Plot |
| LGG | rs143551065 | chr12:69705232 | T/TTG | 0.000211 | 402 | 14.6 | 15.47 | 18.27 | KM Plot |
| LGG | rs143593638 | chr5:167761230 | AAACAAC/A | 2.3E-7 | 398 | 15.95 | 14.47 | 17.93 | KM Plot |
| LGG | rs143665817 | chr7:55947841 | C/T | 2.35E-10 | 404 | 15.2 | 15.65 | 7.8 | KM Plot |
| LGG | rs1437615 | chr2:86872244 | G/T | 0 | 406 | 15.78 | 13.23 | 6.38 | KM Plot |
| LGG | rs144077958 | chr5:156035367 | A/C | 4.58E-5 | 407 | 16.73 | 14.12 | 10.53 | KM Plot |
| LGG | rs144227051 | chr12:102120661 | TTC/T | 3.18E-5 | 402 | 13.85 | 19.33 | 21.25 | KM Plot |
| LGG | rs144534627 | chr9:33806769 | TC/T | 2.15E-5 | 403 | 15.55 | 15.67 | 6.13 | KM Plot |
| LGG | rs144536222 | chr5:155988757 | G/GT | 5.15E-6 | 407 | 15.45 | 15.17 | 15.37 | KM Plot |
| LGG | rs144833133 | chr20:3370665 | A/G | 1.04E-7 | 406 | 15.93 | 11.55 | 6.83 | KM Plot |
| LGG | rs1448774 | chr9:22750629 | C/T | 9.71E-9 | 407 | 15.47 | 14.48 | 6.83 | KM Plot |
| LGG | rs144956706 | chr6:36035259 | C/CA | 1.02E-9 | 405 | 15.7 | 14.95 | 6.15 | KM Plot |